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High-performance exploration and querying of selected multi-dimensional spaces in life sciences
Kratochvíl, Miroslav ; Bednárek, David (advisor) ; Glaab, Enrico (referee) ; Svozil, Daniel (referee)
This thesis studies, implements and experiments with specific application-oriented approaches for exploring and querying multi-dimensional datasets. The first part of the thesis scrutinizes indexing of the complex space of chemical compounds, and details a design of high-performance retrieval system for small molecules. The resulting system is then utilized within a wider context of federated search in heterogeneous data and metadata related to the chemical datasets. In the second part, the thesis focuses on fast visualization and exploration of many-dimensional data that originate from single- cell cytometry. Self-organizing maps are used to derive fast methods for analysis of the datasets, and used as a base for a novel data visualization algorithm. Finally, a similar approach is utilized for highly interactive exploration of multimedia datasets. The main contributions of the thesis comprise the advancement in optimization and methods for querying the chemical data implemented in the Sachem database cartridge, the federated, SPARQL-based interface to Sachem that provides the heterogeneous search support, dimensionality reduction algorithm EmbedSOM, design and implementation of the specific EmbedSOM-backed analysis tool for flow and mass cytometry, and design and implementation of the multimedia...
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Multi-model Approach For Effective Multimedia Exploration
Grošup, Tomáš ; Lokoč, Jakub (advisor) ; Somol, Petr (referee)
This work is focusing on exploration of multimedia collections. It describes the problematic of exploration and proposes new approaches to it, two based on the data structure M-Index and two utilizing multiple similarity models at once. Those approaches were compared using an extensive user study. Part of this work is also devoted to analysis of a new exploration system, design of its architecture, system implementation and its deployment. This exploration system was used in several applications, which are also shown and described in this thesis.
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Information retrieval and navigation in audio-visual archives
Galuščáková, Petra ; Pecina, Pavel (advisor) ; Jones, Gareth (referee) ; Ircing, Pavel (referee)
The thesis probes issues associated with interactive audio and video retrieval of relevant segments. Text-based methods for search in audio-visual archives using automatic transcripts, subtitles and metadata are first described. Search quality is analyzed with respect to video segmentation methods. Navigation using multimodal hyperlinks between video segments is then examined as well as methods for automatic detection of the most informative anchoring segments suitable for subsequent hyperlinking application. The described text-based search, hyperlinking and anchoring methods are finally presented in working form through their incorporation in an online graphical user interface.
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Multi-model Approach For Effective Multimedia Exploration
Grošup, Tomáš ; Lokoč, Jakub (advisor)
This work is focusing on exploration of multimedia collections. It describes the problematic of exploration and proposes new approaches to it, two based on the data structure M-Index and two utilizing multiple similarity models at once. Those approaches were compared using an extensive user study. Part of this work is also devoted to analysis of a new exploration system, design of its architecture, system implementation and its deployment. This exploration system was used in several applications, which are also shown and described in this thesis.
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High-performance exploration and querying of selected multi-dimensional spaces in life sciences
Kratochvíl, Miroslav ; Bednárek, David (advisor) ; Glaab, Enrico (referee) ; Svozil, Daniel (referee)
This thesis studies, implements and experiments with specific application-oriented approaches for exploring and querying multi-dimensional datasets. The first part of the thesis scrutinizes indexing of the complex space of chemical compounds, and details a design of high-performance retrieval system for small molecules. The resulting system is then utilized within a wider context of federated search in heterogeneous data and metadata related to the chemical datasets. In the second part, the thesis focuses on fast visualization and exploration of many-dimensional data that originate from single- cell cytometry. Self-organizing maps are used to derive fast methods for analysis of the datasets, and used as a base for a novel data visualization algorithm. Finally, a similar approach is utilized for highly interactive exploration of multimedia datasets. The main contributions of the thesis comprise the advancement in optimization and methods for querying the chemical data implemented in the Sachem database cartridge, the federated, SPARQL-based interface to Sachem that provides the heterogeneous search support, dimensionality reduction algorithm EmbedSOM, design and implementation of the specific EmbedSOM-backed analysis tool for flow and mass cytometry, and design and implementation of the multimedia...
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Information retrieval and navigation in audio-visual archives
Galuščáková, Petra ; Pecina, Pavel (advisor) ; Jones, Gareth (referee) ; Ircing, Pavel (referee)
The thesis probes issues associated with interactive audio and video retrieval of relevant segments. Text-based methods for search in audio-visual archives using automatic transcripts, subtitles and metadata are first described. Search quality is analyzed with respect to video segmentation methods. Navigation using multimodal hyperlinks between video segments is then examined as well as methods for automatic detection of the most informative anchoring segments suitable for subsequent hyperlinking application. The described text-based search, hyperlinking and anchoring methods are finally presented in working form through their incorporation in an online graphical user interface.
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Multi-model Approach For Effective Multimedia Exploration
Grošup, Tomáš ; Lokoč, Jakub (advisor)
This work is focusing on exploration of multimedia collections. It describes the problematic of exploration and proposes new approaches to it, two based on the data structure M-Index and two utilizing multiple similarity models at once. Those approaches were compared using an extensive user study. Part of this work is also devoted to analysis of a new exploration system, design of its architecture, system implementation and its deployment. This exploration system was used in several applications, which are also shown and described in this thesis.
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|
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Multi-model Approach For Effective Multimedia Exploration
Grošup, Tomáš ; Lokoč, Jakub (advisor) ; Somol, Petr (referee)
This work is focusing on exploration of multimedia collections. It describes the problematic of exploration and proposes new approaches to it, two based on the data structure M-Index and two utilizing multiple similarity models at once. Those approaches were compared using an extensive user study. Part of this work is also devoted to analysis of a new exploration system, design of its architecture, system implementation and its deployment. This exploration system was used in several applications, which are also shown and described in this thesis.
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